PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA60327.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB_related

Protein Properties

Length: 511aa MW: 59232.8 Da PI: 9.9887

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA60327.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.4	2.8e-07	377	417	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW +eE ell++++ +G++ W++ a +g + + ++k+ w+ PKA60327.1 377 RWEPEEYELLKRYHMNHGTK-WRKLADLLG--KYRGHVKDTWRR 417 9*****************.******9..677888888875 PP

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence
MANDSRVNMS NLSKNNNHEG KMGKSKWDRK DKMEKRHKAS EGFISSKKFC SDRICLKSNY 60 NDERVKQNEK GEYGVQWKEV ARKQNVGPDY ASLERGPADG ETILETNHDD LSRFTKDSKS 120 ARKKKGNIMV IDNSTPATHG CNFSNDKEHE RKRKRINYRL ELGQSQGCSK KHPRLASCKE 180 NESVIEDDSN ELPSRKDIGN KMKKKNKNKI LNCDSVLSAK VITQSGQGDQ GDRSTRSNHS 240 KKLDVRTMNV AKCSSSNISQ KSEHMKAPEH VKKRVRFSNE VEEFPPSPPN HEGSSSHNFV 300 MGKRFTPEED ELIKTAVMSF IERKQLGEQG LDMVLHVNRY PQLKGCWNEI ASSIPWRPPC 360 SVYNRAHSLY ERSENCRWEP EEYELLKRYH MNHGTKWRKL ADLLGKYRGH VKDTWRRIRL 420 SNRKRGRWSQ DECQSLYDLV NLDLRIKAFQ KKDKKYGLIR QNISWEAIST KLATRPVGVC 480 SDKWYHQLAS SMVQEGYWND LDDYVLIDAT L

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence

MANDSRVNMS NLSKNNNHEG KMGKSKWDRK DKMEKRHKAS EGFISSKKFC SDRICLKSNY  60
NDERVKQNEK GEYGVQWKEV ARKQNVGPDY ASLERGPADG ETILETNHDD LSRFTKDSKS  120
ARKKKGNIMV IDNSTPATHG CNFSNDKEHE RKRKRINYRL ELGQSQGCSK KHPRLASCKE  180
NESVIEDDSN ELPSRKDIGN KMKKKNKNKI LNCDSVLSAK VITQSGQGDQ GDRSTRSNHS  240
KKLDVRTMNV AKCSSSNISQ KSEHMKAPEH VKKRVRFSNE VEEFPPSPPN HEGSSSHNFV  300
MGKRFTPEED ELIKTAVMSF IERKQLGEQG LDMVLHVNRY PQLKGCWNEI ASSIPWRPPC  360
SVYNRAHSLY ERSENCRWEP EEYELLKRYH MNHGTKWRKL ADLLGKYRGH VKDTWRRIRL  420
SNRKRGRWSQ DECQSLYDLV NLDLRIKAFQ KKDKKYGLIR QNISWEAIST KLATRPVGVC  480
SDKWYHQLAS SMVQEGYWND LDDYVLIDAT L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41020.1	3e-78	MYB_related family protein