PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA60368.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family C3H
Protein Properties Length: 358aa    MW: 37166.4 Da    PI: 9.6706
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA60368.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.7e-08160185227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 k +lC+ f     Ck+Gd+C+FaHg+
  PKA60368.1 160 KSRLCNKFNTPEGCKFGDKCHFAHGE 185
                 679*********************96 PP
2zf-CCCH331e-10325349126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt+lC  fa+ G C +G+rC+FaHg
  PKA60368.1 325 FKTKLCEKFAK-GACTFGERCHFAHG 349
                 69*********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    
MYIHGLCSLV GSMLSFAYYF VLSVIERGRS KKTKSSVHSS NESREELKAK IAYTILCCQC  60
GNRLASMNPL GGARKRGRPG AANANGGVPG FKRPKAVDFS CSTAGCPFGE GCHFLHFVPG  120
GYNAVAQITN LGNPNPSPAP RNPAAFAAPI SDGHATPVVK SRLCNKFNTP EGCKFGDKCH  180
FAHGEWELGK PVTSSHEPPV ASPFGIGRRP GGRLEPPPTG ISPAASFGAS ATAKISVDAS  240
LAGAIIGKGG SNTKQICHMT GAKLSIRDHE SDPNLRNIEL EGTFDQIKQA SAMVRDLIVS  300
VSSAAPVPMK AAGGGGGGGG PGANFKTKLC EKFAKGACTF GERCHFAHGA SELRNTAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.15e-55C3H family protein