PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA60466.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

TCP

Protein Properties

Length: 343aa MW: 35900.9 Da PI: 8.3034

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA60466.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	137.9	8.4e-43	68	210	2	136
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.....kaaksa 94 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s+g ++a+++ PKA60466.1 68 PPKRSSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSISAGpshhlRSAAAS 166 789****************************************************************999866666666663333366677777777 PP TCP 95 akskksqksaasalnlakesrakarar.are.rtrekmriknkl 136 a+ +s+++++s ln++++s+a+ +a r+ r++++ ++++++ PKA60466.1 167 AHYLSSPAPTHSLLNIQESSSADDDAGhLRKrRWEQELSQQQQQ 210 7777888888888***99988888744443666666655544 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MISYNGVVNP IMEEEGAGGS GGAGGPRRPN FPLQLLEKRE DEASCSTSSA AAAAGRLSSP 60 TDPPKKPPPK RSSTKDRHTK VEGRGRRIRM PALCAARVFQ LTRELGHKSD GETIEWLLQQ 120 AEPAVIAATG TGTIPANFTS LNISLRSSGS SISAGPSHHL RSAAASAHYL SSPAPTHSLL 180 NIQESSSADD DAGHLRKRRW EQELSQQQQQ QMVGYATGAH GQLPTAVWMA GGNGSGGVSG 240 EQAWPFAQMG TTAMFRGSMS SGLHFMNFPA PMALLPGQQL GLGSAAAGVA AGGEGHLGVL 300 AALNSYRPAG AVQEQASHLL HLQQQHRSGE SSERNDTMST SDN

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MISYNGVVNP IMEEEGAGGS GGAGGPRRPN FPLQLLEKRE DEASCSTSSA AAAAGRLSSP  60
TDPPKKPPPK RSSTKDRHTK VEGRGRRIRM PALCAARVFQ LTRELGHKSD GETIEWLLQQ  120
AEPAVIAATG TGTIPANFTS LNISLRSSGS SISAGPSHHL RSAAASAHYL SSPAPTHSLL  180
NIQESSSADD DAGHLRKRRW EQELSQQQQQ QMVGYATGAH GQLPTAVWMA GGNGSGGVSG  240
EQAWPFAQMG TTAMFRGSMS SGLHFMNFPA PMALLPGQQL GLGSAAAGVA AGGEGHLGVL  300
AALNSYRPAG AVQEQASHLL HLQQQHRSGE SSERNDTMST SDN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	1e-39	TCP family protein