PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA60684.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 293aa MW: 32907.1 Da PI: 7.6663

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA60684.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.8	1.1e-17	32	78	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WTteEdellv++v ++G + W+ Ia+ + gR +kqc++rw+++l PKA60684.1 32 RGQWTTEEDELLVKLVGEFGVRKWSHIAKNLI-GRIGKQCRERWHNHL 78 89****************************.***********97 PP
2	Myb_DNA-binding	55.1	1.7e-17	86	128	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ WT eE+ +l+ a+++ G++ W+ Ia++++ gR+++++k++w+ PKA60684.1 86 KDTWTDEEERRLITAHEEIGNR-WAEIAKRIP-GRSENSIKNHWN 128 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence
MEEEEEKKKK IKKESSWSSI NSSSFAARGC VRGQWTTEED ELLVKLVGEF GVRKWSHIAK 60 NLIGRIGKQC RERWHNHLRP DIKVIKDTWT DEEERRLITA HEEIGNRWAE IAKRIPGRSE 120 NSIKNHWNAT KRRISSKRKP PISRRKSPKT KPSLLQDYIR SKHLVLLGTP NPKQQQHDAG 180 GAVTAAPPPE PLDFGAEDDS FMSLMSMTEY GFVDSSPPEL HELLGREDGG GGGGQICSDF 240 YVPYFMEGAP AAAPAQGRID GGGEGGDGHE WVWGCKKDVD FMEMISPHAS FFA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	1e-58	MYB family protein