PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA60689.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family MYB
Protein Properties Length: 297aa    MW: 32844.9 Da    PI: 5.5977
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA60689.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+lv++++ +G g+W+ ++++ g+ R++k+c++rw +yl
       PKA60689.1 14 RGLWSPEEDEKLVRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61
                     788*******************************************97 PP
2Myb_DNA-binding54.82.2e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr+T+eE++l++ ++   G++ W+ Ia++++ gRt++++k++w+++
       PKA60689.1  67 RGRFTQEEEKLIISLHSVVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111
                      89********************.*********.************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MGHHSCCNQQ KVKRGLWSPE EDEKLVRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TQEEEKLIIS LHSVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKPN  120
TSSGPPTMNE LILPSPTSCF NSLNQMENNI MNSTATITSK PDQTAGSAIF PTPCPFFMLE  180
GDNVGNLQNS HNIWSAAGHS QLEQALPPLP AFAGNVDSTC LPPLIDGMAA AGMVLSAMGD  240
EGEASCSQEC FEKSELSEWV EADQQYPAGF FIWEDDPAME GQLPAVSTPS GSFPSSA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.14e-86MYB family protein