PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA60734.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 246aa MW: 27860.5 Da PI: 6.1734

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA60734.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.7	1.7e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv + G +W+++++ g+ R++k+c++rw +yl PKA60734.1 14 KGPWTAEEDKKLVSFILSNGHCCWRAVPKLAGLLRCGKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	51.1	3.1e-16	70	111	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 T E+++ ++++++lG++ W++Ia++++ gRt++++k++w+++ PKA60734.1 70 LTDAEEQIVINLHARLGNR-WSKIASKLP-GRTDNEIKNHWNTH 111 5899*************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence
MGRQPCCDKL RVKKGPWTAE EDKKLVSFIL SNGHCCWRAV PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGLL TDAEEQIVIN LHARLGNRWS KIASKLPGRT DNEIKNHWNT HIKKKLLRMG 120 IDPITHKPLT DDQSSPAATT SSNSAITIEE IFGSNHASPP QETGINPVSI ELNSGTCQDP 180 MVIENCILED HHNSTFSDSY WSFLDGIEAN WEGLSSHEWL LDYQDFGLED LELEILGFDH 240 EENKLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12350.1	1e-83	MYB family protein