PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA60835.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family HD-ZIP
Protein Properties Length: 784aa    MW: 84590.2 Da    PI: 5.978
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA60835.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.44.3e-2296151156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++eLe+lF+++++p++++r eL+k+l+L+ rqVk+WFqNrR+++k
  PKA60835.1  96 KKRYHRHTPQQIQELEALFKECPHPDEKQRMELSKRLNLDPRQVKFWFQNRRTQMK 151
                 688999***********************************************998 PP
2START157.41.1e-492865121205
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                 ela++a++elvk+a+ e+p+W +s+      +n de+ + f +  +      + +ea r++g+v m+ +  v +++d + +W + ++    ka+t++ i
  PKA60835.1 286 ELALAAMDELVKMAQMEAPLWISSVdghgAVLNFDEYGRFFHRCSTgpkppeFVSEATRETGIVLMNGMAFVDSFMDAS-RWAKIFPsivaKAATVDII 383
                 5899*********************777766777777777766555999**99**************************.******************* PP

                 CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE..-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
       START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvR..aellpSgiliepksnghskvtwvehvdlkgr 175
                 ssg      g l l+ aelq+l+plvp R++ f+R+++q+ +g+w++vdvSvds ++    s+v+R  +++lpSg+l++ ++ng+skvtwveh+++++ 
  PKA60835.1 384 SSGmggsrsGSLILIEAELQVLTPLVPvREVSFLRFCKQHAEGVWAVVDVSVDSFRETLPASGVARmsCRRLPSGCLVQAMPNGYSKVTWVEHAEYDET 482
                 *****************************************************999976699*999999****************************** PP

                 XXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
       START 176 lphwllrslvksglaegaktwvatlqrqce 205
                  +h l+r+ ++ g+  ga++w++ lqrq e
  PKA60835.1 483 AVHRLYRPPLRAGICLGARRWLSELQRQAE 512
                 ***************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    
MSFGGLFDAA GAGGLPPYSY AGFAPSRIIS PGLSLGLTNA DGKGIMSRLG TLGDGGRGGE  60
PPVRNREDEN ESRSGGSDNL EAGSGDDLDP ENPRKKKRYH RHTPQQIQEL EALFKECPHP  120
DEKQRMELSK RLNLDPRQVK FWFQNRRTQM KIERHENSIL RAENDKLRVE NLTIREAMRN  180
PICGTCGSPA MLGEVPLEEQ HLRIENARLK DELDRVCALA SRFLGRPMPV SPFPALPLDL  240
TPGGFSSVAP TLTAVSSDFT EAGVGPIPAP PRASTDRSAE RSMLLELALA AMDELVKMAQ  300
MEAPLWISSV DGHGAVLNFD EYGRFFHRCS TGPKPPEFVS EATRETGIVL MNGMAFVDSF  360
MDASRWAKIF PSIVAKAATV DIISSGMGGS RSGSLILIEA ELQVLTPLVP VREVSFLRFC  420
KQHAEGVWAV VDVSVDSFRE TLPASGVARM SCRRLPSGCL VQAMPNGYSK VTWVEHAEYD  480
ETAVHRLYRP PLRAGICLGA RRWLSELQRQ AEFIAIMAAS SSPAPRDSPV AITAAGRRSM  540
MRLAGRMTEN FCAGVCAWAE RKWREVRAGD TEEDDMVRVM TRQSVDDPGE PPGVVLSAST  600
SVWLPAAAPH RLFEFLRDER LRRDWDILSN GGPMQEVAHI AKGQDHGNAV SLLRATVPSA  660
GAGANGGGGQ KQEEESMLIL QETSTDAAGS LVVYAPVDAP AINLVMNGGD SSYVALLPSG  720
FSILPDGTAC CGGGGGGSLL TVAFQILVTT LSSAELTAQS VDTVKSLISC TVLKIKSALR  780
SDPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0HD-ZIP family protein