PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA61011.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

HB-PHD

Protein Properties

Length: 701aa MW: 78399.2 Da PI: 5.1033

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA61011.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	43.1	7.3e-14	563	606	13	56
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +eL e+F++n+yp++e++e LA++lg+t +qV+ WF N R +++ PKA61011.1 563 KELFEAFQENHYPTREKKESLAQELGMTFQQVTRWFENARRRWR 606 68999**************************************9 PP
2	PHD	39.1	1.7e-13	216	267	1	51
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSSTBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpegewlCeeCkek 51 +C Cg+ + +++++vlCd +C++ fH+ Cl+++l see + ewlC++C++k PKA61011.1 216 FCGKCGSkdASNDNDIVLCDgNCERGFHQRCLNPPLLSEESE--EWLCPQCNCK 267 699999976667******66***********77775..6****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence
MHGQKPDSSN DALSESLNAK CEKVTSEELA AQNKVNLDVV FQSKNGNTAN GETEDCNKSA 60 CKEKKDLPKM LRNAYSLRSL DSSRILRSAS KAVDSKSPKS ARKLENLVRS TRKSGKKKGN 120 KSGKDELYGI RARIGYLMKR MNYEQSLIDA YSSEGWKGLS LEKIRPEKEL DRAKSEISRC 180 KLKIRGTFQH LHTLQSEGRL HESLFDPDGI CSENIFCGKC GSKDASNDND IVLCDGNCER 240 GFHQRCLNPP LLSEESEEWL CPQCNCKVDC INLLNESQGT NLSIEDSWER IFPEAAAFAN 300 GSRQSDYVNL PSDDSEDDDY DPGVPGFDID KEEEDEEESS YEESDSSSSE VSATSGHNVN 360 EAISKLSTDD SEDDDFDPDA PDPDTEIYKD KSDSDESDFT SDSDEFCAEL VKSCANEASA 420 SSLPSSDLLA DTNGHNIEHK DMSIVNPEIH CSLVEQGKQE SCLRSSRKRY SERLDYGKLY 480 AYGKASSGSS DDEEWNDMNT AKKMKKIDKK EVDEVLNCSS ARTPQKLQLI SAISASEKGY 540 GHLVRHASHV SSSTVQRSQV PSKELFEAFQ ENHYPTREKK ESLAQELGMT FQQVTRWFEN 600 ARRRWRVSPD ELLNTNRSDS HKLEPIYTSS QKTGLDVIQS SRSSASHLKP NNALVQESST 660 GATRRKDGAS AEKGKEVIVN KEMNDRQKAI AKELRRIRKS R

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence

MHGQKPDSSN DALSESLNAK CEKVTSEELA AQNKVNLDVV FQSKNGNTAN GETEDCNKSA  60
CKEKKDLPKM LRNAYSLRSL DSSRILRSAS KAVDSKSPKS ARKLENLVRS TRKSGKKKGN  120
KSGKDELYGI RARIGYLMKR MNYEQSLIDA YSSEGWKGLS LEKIRPEKEL DRAKSEISRC  180
KLKIRGTFQH LHTLQSEGRL HESLFDPDGI CSENIFCGKC GSKDASNDND IVLCDGNCER  240
GFHQRCLNPP LLSEESEEWL CPQCNCKVDC INLLNESQGT NLSIEDSWER IFPEAAAFAN  300
GSRQSDYVNL PSDDSEDDDY DPGVPGFDID KEEEDEEESS YEESDSSSSE VSATSGHNVN  360
EAISKLSTDD SEDDDFDPDA PDPDTEIYKD KSDSDESDFT SDSDEFCAEL VKSCANEASA  420
SSLPSSDLLA DTNGHNIEHK DMSIVNPEIH CSLVEQGKQE SCLRSSRKRY SERLDYGKLY  480
AYGKASSGSS DDEEWNDMNT AKKMKKIDKK EVDEVLNCSS ARTPQKLQLI SAISASEKGY  540
GHLVRHASHV SSSTVQRSQV PSKELFEAFQ ENHYPTREKK ESLAQELGMT FQQVTRWFEN  600
ARRRWRVSPD ELLNTNRSDS HKLEPIYTSS QKTGLDVIQS SRSSASHLKP NNALVQESST  660
GATRRKDGAS AEKGKEVIVN KEMNDRQKAI AKELRRIRKS R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	5e-69	HB-PHD family protein