PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA61027.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

CO-like

Protein Properties

Length: 413aa MW: 44357.9 Da PI: 6.2998

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA61027.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	27.3	7.7e-09	25	66	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +r C+ + + +++++C ++ +lC+ C ++ H+ H+ PKA61027.1 25 ARACDSCLSRRARWYCAADDAFLCQACDSSVHSAnplarrHE 66 578*****************************6567777776 PP
2	CCT	68.8	1.4e-23	362	405	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ PKA61027.1 362 REARVTRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 405 9*****************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MSHHAEKPRS PPEATVAAAV GGKTARACDS CLSRRARWYC AADDAFLCQA CDSSVHSANP 60 LARRHERLRL KISSFGCGGG LDCFVPAWHH GFKRKARTPR PHHHAKPVVP ELETSGEADG 120 EGENVEEEEQ LLYRVPTLDP AVTALASLSA SRGRDWKSIA ASGGSSGDGK LGLGVMPSEV 180 DMAEFAADME RLLGRGLEGG DSFCMKELGL VDAGEDAVNA GTAVAGAGSG CQLEAVKAET 240 LEDRFDGEVG LSFEMEVDLS RETLELDFHC GSPAAEVPAA AEGDEEEEKQ KSFPRGMALK 300 LDYEAVIAAW SVQGCSPWTS GERPHLGPEE CWLQFMQGMW GGGGGGGMAG GGGIQVMVDV 360 GREARVTRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR FVKRTSFSAA GGS

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MSHHAEKPRS PPEATVAAAV GGKTARACDS CLSRRARWYC AADDAFLCQA CDSSVHSANP  60
LARRHERLRL KISSFGCGGG LDCFVPAWHH GFKRKARTPR PHHHAKPVVP ELETSGEADG  120
EGENVEEEEQ LLYRVPTLDP AVTALASLSA SRGRDWKSIA ASGGSSGDGK LGLGVMPSEV  180
DMAEFAADME RLLGRGLEGG DSFCMKELGL VDAGEDAVNA GTAVAGAGSG CQLEAVKAET  240
LEDRFDGEVG LSFEMEVDLS RETLELDFHC GSPAAEVPAA AEGDEEEEKQ KSFPRGMALK  300
LDYEAVIAAW SVQGCSPWTS GERPHLGPEE CWLQFMQGMW GGGGGGGMAG GGGIQVMVDV  360
GREARVTRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR FVKRTSFSAA GGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	373	389	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	3e-49	CO-like family protein