PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA61042.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C3H

Protein Properties

Length: 506aa MW: 54513.7 Da PI: 7.8173

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA61042.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.5	1.1e-08	132	156	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd C F H+ PKA61042.1 132 GEKDCAHYMLTRTCKFGDACIFDHP 156 7889********************8 PP
2	zf-CCCH	38.7	1.7e-12	183	209	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t CkyG+rCkF+H++ PKA61042.1 183 PGEPDCPYFMKTQKCKYGSRCKFNHPK 209 5789*********************96 PP
3	zf-CCCH	37.6	3.8e-12	234	258	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C f+a+tG Ck+G++CkF+H++ PKA61042.1 234 EPVCAFYAKTGKCKFGANCKFNHPK 258 789********************96 PP
4	zf-CCCH	36.9	6.3e-12	307	331	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG++C+++H+ PKA61042.1 307 GETDCPFYLKTGSCKYGATCRYNHP 331 6789********************9 PP
5	zf-CCCH	41.8	1.8e-13	393	416	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+++++tG+Ck+GdrCkF H+ PKA61042.1 393 EIECDYYMKTGHCKFGDRCKFDHP 416 568********************9 PP
6	zf-CCCH	39.7	7.9e-13	449	472	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+f+++tGtCk+G +C+F H+p PKA61042.1 449 VACPFYMKTGTCKFGVTCRFDHPP 472 68********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence
MAKQIYYGSS YGGSGTGAYS LRGVEPYLPA AVGSATRYSA DALGVAELGD MASSLQSNGL 60 TSAVWRAADG SAVASSVDAG SKRTAEAFYN QSIMATHSTI GQSDPLLSTY YVLKRPRLVS 120 GSHLPVYPQR PGEKDCAHYM LTRTCKFGDA CIFDHPIWVP EGGIPDWKEV PLVPTSDSLP 180 ERPGEPDCPY FMKTQKCKYG SRCKFNHPKE LTARGQVQCN ESAGYSELPE RPSEPVCAFY 240 AKTGKCKFGA NCKFNHPKDL EIESVAKDNG KVEHTNDTAL DGSNGLKGFV PGPAQLHNSK 300 GLPIRPGETD CPFYLKTGSC KYGATCRYNH PDRIFVNPPF TANLSNAIVT PTASTLPIGV 360 INPAVSYIPT IDPRLTQAAV GVGQVIYPQR PGEIECDYYM KTGHCKFGDR CKFDHPLDRS 420 APSLAVAKQQ PQQAVKLTLA GLPRREGSVA CPFYMKTGTC KFGVTCRFDH PPPGEAIAKA 480 TGLQGSEAGI MTESEELEMV AASSFQ

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence

MAKQIYYGSS YGGSGTGAYS LRGVEPYLPA AVGSATRYSA DALGVAELGD MASSLQSNGL  60
TSAVWRAADG SAVASSVDAG SKRTAEAFYN QSIMATHSTI GQSDPLLSTY YVLKRPRLVS  120
GSHLPVYPQR PGEKDCAHYM LTRTCKFGDA CIFDHPIWVP EGGIPDWKEV PLVPTSDSLP  180
ERPGEPDCPY FMKTQKCKYG SRCKFNHPKE LTARGQVQCN ESAGYSELPE RPSEPVCAFY  240
AKTGKCKFGA NCKFNHPKDL EIESVAKDNG KVEHTNDTAL DGSNGLKGFV PGPAQLHNSK  300
GLPIRPGETD CPFYLKTGSC KYGATCRYNH PDRIFVNPPF TANLSNAIVT PTASTLPIGV  360
INPAVSYIPT IDPRLTQAAV GVGQVIYPQR PGEIECDYYM KTGHCKFGDR CKFDHPLDRS  420
APSLAVAKQQ PQQAVKLTLA GLPRREGSVA CPFYMKTGTC KFGVTCRFDH PPPGEAIAKA  480
TGLQGSEAGI MTESEELEMV AASSFQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-168	C3H family protein