PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA61060.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family NF-YB
Protein Properties Length: 216aa    MW: 22596.9 Da    PI: 6.7892
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA61060.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB185.83.1e-5826121297
       NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrkt+ngddllwa+atlGfedyveplk+yl+k+releg+k
  PKA61060.1  26 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTVNGDDLLWAMATLGFEDYVEPLKIYLHKFRELEGDK 121
                 89********************************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MVDSDNESGG QNNSIAAGNG ELASQREQDR FLPIANVSRI MKKALPANAK ISKDAKETVQ  60
ECVSEFISFI TGEASDKCQR EKRKTVNGDD LLWAMATLGF EDYVEPLKIY LHKFRELEGD  120
KSAASSSSQP QSKDAAAGRG SASSGGNDSS AVRGSNGGGY AGVGMYPSGG FMVMGQPTYG  180
SSQSPVYHHQ MAAMGSFGTS GNSSSSSSGI GRQGKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.12e-69NF-YB family protein