PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA61340.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

HD-ZIP

Protein Properties

Length: 194aa MW: 21682.5 Da PI: 6.6368

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA61340.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54	2.8e-17	65	118	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++++eq Lee F+ n++++ +++e LA+kl+L +rqV vWFqNrRa+ k PKA61340.1 65 KKLRLSREQSLLLEESFRLNQTLNPKQKETLASKLRLRQRQVEVWFQNRRARTK 118 677899**********************************************98 PP
2	HD-ZIP_I/II	113.9	9.6e-37	65	151	2	88
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 kk+rls+eq+ lLEesF+ +++L+p++K++la++L+l++rqv+vWFqnrRARtk+kq+E+++e+Lkr++ l+een+rL++eveeLr PKA61340.1 65 KKLRLSREQSLLLEESFRLNQTLNPKQKETLASKLRLRQRQVEVWFQNRRARTKLKQTEMECEYLKRCFGLLTEENRRLQREVEELR 151 9*************************************************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence
MDDLELTMAI QGLSSTSGSE GGGCNMRDLD MNRPASGPEE EFPAGSEEEE GGDGDGDGDG 60 GNRPKKLRLS REQSLLLEES FRLNQTLNPK QKETLASKLR LRQRQVEVWF QNRRARTKLK 120 QTEMECEYLK RCFGLLTEEN RRLQREVEEL RGLRVAPPTV LSPVTRRPMP ASAFTMCPRC 180 QRLSMAAAPP SAAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	121	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	2e-42	HD-ZIP family protein