PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA61465.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family MYB
Protein Properties Length: 254aa    MW: 29058.4 Da    PI: 5.4099
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA61465.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.8e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l + + ++G g+W+++++  g+ R++k+c++rw +yl
       PKA61465.1 14 KGLWSPEEDEKLFNHIIRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding52.31.3e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++++eE++l++++++ lG++ W+ Ia+ ++ gRt++++k++w++ 
       PKA61465.1  67 RGSFSQEEEDLIINLHEVLGNR-WSQIASQLP-GRTDNEIKNFWNSC 111
                      899*******************.*********.***********975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MGRHSCCMKQ KLRKGLWSPE EDEKLFNHII RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SQEEEDLIIN LHEVLGNRWS QIASQLPGRT DNEIKNFWNS CLKKKLRQRG  120
IDPATHKPLN ESEAKEKMDP EKPMFDPFPV FEFQSEPDQS GANLNFYEQF QTSLIPAHGF  180
CEYGNMLIDG SENYCYGESS GTSCNWSCNM GNEALNWNSE GDQWQQGGSC QANSSEDNND  240
SIQMRNSYFG GDLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118LKKKLRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.11e-82MYB family protein