PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA61947.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

LBD

Protein Properties

Length: 164aa MW: 17582.2 Da PI: 8.1537

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA61947.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.2	1.2e-42	24	123	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C++apyfpa++p+kfa vhk+FGasnv+kll++lp +r+da+sslvyeA ar+rdPvyG+v+ i++lq++++ l+++la +++ PKA61947.1 24 PCAACKLLRRRCAQGCIFAPYFPADEPQKFATVHKVFGASNVSKLLQELPMGHRSDAVSSLVYEAMARVRDPVYGCVAAISSLQRHIQLLQSQLAFAQA 122 7**********************************************************************************************9998 PP DUF260 100 e 100 e PKA61947.1 123 E 123 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence
MGREEREAGS RKQGGSGAGG PASPCAACKL LRRRCAQGCI FAPYFPADEP QKFATVHKVF 60 GASNVSKLLQ ELPMGHRSDA VSSLVYEAMA RVRDPVYGCV AAISSLQRHI QLLQSQLAFA 120 QAELVRLHLH HAAASHAVTD TAADADGKMM LSLDVLLDHA LWSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	1e-45	LBD family protein