PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA61952.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 211aa MW: 24020.2 Da PI: 6.6632

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA61952.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.3	4.8e-15	23	70	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l+d + + G +W+t + + g+ R++k+c++rw +yl PKA61952.1 23 KGPWTPAEDMKLADFILKNGHSNWRTLPTHAGLQRCGKSCRLRWINYL 70 79********************************************97 PP
2	Myb_DNA-binding	56.2	8.1e-18	76	120	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eE+e +++++ +lG++ W++Ia++++ gRt++++k+ w+++ PKA61952.1 76 RGNFTQEEEETIIKLHSELGNK-WSKIASCLP-GRTDNEIKNVWHTH 120 89******************.*****.*********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence
MGGRRRGQGR GRAPCCEKEG VNKGPWTPAE DMKLADFILK NGHSNWRTLP THAGLQRCGK 60 SCRLRWINYL RPDIKRGNFT QEEEETIIKL HSELGNKWSK IASCLPGRTD NEIKNVWHTH 120 IKKRLAPPPI TPAKSVESRK LGSSPARSSA DLEDNYTEGL MDFEVLPVVE EGGWVFSDYA 180 LVDYWMDRSE KELDMNVGCE DGAFEEEICL W

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79180.1	7e-65	MYB family protein