PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA61985.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family HD-ZIP
Protein Properties Length: 846aa    MW: 92519.5 Da    PI: 5.9664
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA61985.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13e-182279457
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  PKA61985.1 22 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilaNIEAKQIKVWFQNRRCREKQ 79
                6789****************************************************97 PP
2START154.31e-481703752203
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +ae +++e+++ka+ ++  Wv+++ +++g++++ +f++ ++ sg a+ra+g+v  ++   v+e+l+d++ W  ++++ +++ v+  g  g ++l ++++
  PKA61985.1 170 IAEGTLAEFLSKATGTAVDWVQMVGMKPGPDSIGIFVSHNG-SGIAARACGLVSLEPI-KVAEVLKDRLAWFGDCRSLDVVSVVPAGngGNIELVYMQT 266
                 5778899*******************************999.****************.9999999999****************9999********** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+++l++ Rdf+++Ry+ +l++g++vi+++S++s +  p    ++ +vRae+lpSg+li+p+++g+s +++v+hvdl++ + +++lr+l++s  + + 
  PKA61985.1 267 YAPTTLASaRDFWTLRYSTCLEDGSLVICERSLTSSTGGPAgpcTPDFVRAEMLPSGYLIRPCEGGGSMIHIVDHVDLDALTAPEILRPLYESPKFLAG 365
                 ****************************************999******************************************************** PP

                 HHHHHHTXXX CS
       START 194 ktwvatlqrq 203
                 k++ a+l++ 
  PKA61985.1 366 KMTIAALRHI 375
                 ***9999876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 846 aa     Download sequence    
MEMGLMAGGK EGGKHQIDGG KYVRYTPEQV EALERVYSEC PKPSSLRRQQ LIRECPILAN  60
IEAKQIKVWF QNRRCREKQR KEASRLQTVN RKLNAMNKLL MEENDRLQKQ VSELVYENGY  120
IRQQLQNVPV SATDTSCESV VTSSQHLHQQ NQTSHHPPRD ADNPSGLLAI AEGTLAEFLS  180
KATGTAVDWV QMVGMKPGPD SIGIFVSHNG SGIAARACGL VSLEPIKVAE VLKDRLAWFG  240
DCRSLDVVSV VPAGNGGNIE LVYMQTYAPT TLASARDFWT LRYSTCLEDG SLVICERSLT  300
SSTGGPAGPC TPDFVRAEML PSGYLIRPCE GGGSMIHIVD HVDLDALTAP EILRPLYESP  360
KFLAGKMTIA ALRHIRQIAQ ETSGEISYVG QRKPAVLRTF SQRLSRGFND AINGFTDDGW  420
SFLGCDGMED ITIAINSSLN MLFSTQSNSA SFSSLNCGIL CAKASMLLED VPPAILVRFL  480
REHRSEWADH SIDAYSAASL RAGAYAVPSL RAGSGFVGGQ VIIPLAHTIE NEEFLEVIRL  540
ESPGLSQEEV LSSNMHLLQL CSGIDENAAS ACSQLVFAVI DESFSDAAPL LPSGFRVIPL  600
DPKVEDFPST RTLDLASSLE VGVRGAVRTS EIATNTYNMR SVLTIAFQFT YENHLQESVA  660
AVARQYVRSV VASVQRVAMA IATSRLGMHL GMNHPHGSPE AHTLGGWISR SYRFYTGVDL  720
LRSESQCGDS LLKLLWLHSD AILCCSLEAS PSFTFANQAG LDMLETTLVA LQDITLEKVL  780
DDGGRKVLCS EFPMLVQQGF AHLPAGICLS SMGRPVAYKQ AIAWKVLNDE DSHHCLAFMF  840
VSWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein