PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA62001.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

TCP

Protein Properties

Length: 428aa MW: 46978.1 Da PI: 8.2445

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA62001.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.6	9e-38	71	210	2	129
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssa..sec.eaesssssas.nss 86 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk+ieWL+++a ai el+++ + ++ +++++ ++ +++ PKA62001.1 71 SGGKDRHSKVFTSKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLINAASSAIAELPSLgstfpelpvpA---KklEDPiMDDTEVDRGHyQQQ 166 689***********************************************************87776664431...233222433333333331344 PP TCP 87 sgkaaksaakskksqksaasalnlak.esrakarararertrek 129 ++ +++++ +s+ s++s+ s+l+l++ e r kar+rar r+ ++ PKA62001.1 167 QHLSMSKSGCSSTSETSKGSVLSLSRsENRVKARERARSRDVKE 210 44667777799***********9*********986554 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MENRHACKRS RVSTGDRPVP LIGRRENHSY EDYVVDEDEA TASGSNATIG GNNLGQWQHP 60 SSRIFRVSRA SGGKDRHSKV FTSKGLRDRR VRLSVSTAIQ FYDLQDRLGY DQPSKAIEWL 120 INAASSAIAE LPSLGSTFPE LPVPAKKLED PIMDDTEVDR GHYQQQQHLS MSKSGCSSTS 180 ETSKGSVLSL SRSENRVKAR ERARSRDVKE RDRDEHGGLH LISSTSKLRQ HMDPTFISQN 240 SFTELLTCAA AGYSCNDGAT VTDCINKQIR HSPLVKITPD YFAPQQSVFP PKASTQAHFW 300 NNIAAASAAG DNSQMQRFSF TQEQMDFNLN FSIAPGLTNF SRGTLQSKSS ALSVQQHPQL 360 RRFSSSSSME GPNLPLIFGA VAPAPAAASS ALDFHLDFGS HLQLNGNTST PLLLDGYRTS 420 ELEGKGES

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MENRHACKRS RVSTGDRPVP LIGRRENHSY EDYVVDEDEA TASGSNATIG GNNLGQWQHP  60
SSRIFRVSRA SGGKDRHSKV FTSKGLRDRR VRLSVSTAIQ FYDLQDRLGY DQPSKAIEWL  120
INAASSAIAE LPSLGSTFPE LPVPAKKLED PIMDDTEVDR GHYQQQQHLS MSKSGCSSTS  180
ETSKGSVLSL SRSENRVKAR ERARSRDVKE RDRDEHGGLH LISSTSKLRQ HMDPTFISQN  240
SFTELLTCAA AGYSCNDGAT VTDCINKQIR HSPLVKITPD YFAPQQSVFP PKASTQAHFW  300
NNIAAASAAG DNSQMQRFSF TQEQMDFNLN FSIAPGLTNF SRGTLQSKSS ALSVQQHPQL  360
RRFSSSSSME GPNLPLIFGA VAPAPAAASS ALDFHLDFGS HLQLNGNTST PLLLDGYRTS  420
ELEGKGES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.1	1e-50	TCP family protein