PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA62182.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MIKC_MADS

Protein Properties

Length: 252aa MW: 28931 Da PI: 9.5894

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA62182.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84.3	7.5e-27	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA EL +LCdaev ++ifsstg+ly++ss PKA62182.1 10 RIDNSTSRQVTFSKRRNGLLKKARELAILCDAEVGLVIFSSTGRLYDFSS 59 8***********************************************96 PP
2	K-box	85.2	1.4e-28	73	168	3	98
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 k +++ +++++ +++e+++L+++++nLq+++R+l+Ge+L+ Ls+k+Lq Le++Le sl+ +R kK+++l ++i+el +k +++en++L kk+ PKA62182.1 73 KEQQVTNTTNDVRFWKEEATNLRQQLQNLQENHRKLMGEELSGLSFKDLQTLENRLEMSLRGVRMKKEQILSDEIQELNRKGYLIHQENMELYKKV 168 445555889999*********************************************************************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KARELAILCD AEVGLVIFSS TGRLYDFSST 60 SMKSVIERYT KAKEQQVTNT TNDVRFWKEE ATNLRQQLQN LQENHRKLMG EELSGLSFKD 120 LQTLENRLEM SLRGVRMKKE QILSDEIQEL NRKGYLIHQE NMELYKKVNL LRQENMELYK 180 KVFGSRDSNG EVINSSIIPL AIGMNEESSA AFSLELCQPQ GPQQPINATQ PHDPELGLQL 240 HQGKIQRESS FA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	6e-89	MIKC_MADS family protein