PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA62314.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family bHLH
Protein Properties Length: 194aa    MW: 21212.3 Da    PI: 11.8584
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA62314.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.000291281641354
                 HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 R  +N + + L +l+P +     +Kls ++ Le+A +YI  L
  PKA62314.1 128 RTVLNGKAAVLGRLVPGC-----RKLSLSTLLEEASDYIAAL 164
                 566777888899999998.....8***************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    
MALSDADGDS AAKEGDRKRK RSEVVWRPPM EKWRTVSEQK TYSSKLLLAL RHVRSYAPAA  60
DLAPRSRAVR EAADRALAVA ARGRTRWSRA ILSHRKRRQR WPRSAAPSSA GPRFTGECSR  120
SSAKKKSRTV LNGKAAVLGR LVPGCRKLSL STLLEEASDY IAALEMQVRA MSTLTAILSA  180
AGGSSSPQSE RITP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06590.23e-23bHLH family protein