PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA62537.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family M-type_MADS
Protein Properties Length: 251aa    MW: 28306 Da    PI: 10.1036
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA62537.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.73.1e-181149341
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                i n+s r  t+ kRr+g+lKKA+ELS+LCd+++++i+f+
  PKA62537.1 11 IANDSARRATLKKRRKGLLKKASELSTLCDVKACLILFA 49
                89**********************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MARKKVKLEW IANDSARRAT LKKRRKGLLK KASELSTLCD VKACLILFAA GEPQPEVWPS  60
HHEAARILAK LKRLPEMEQG KKMMNQEGFM RQRITKLQEQ LQKQERENRE LETTLLMYQG  120
LMGKTMSDVS IKDLTSLAWL IELKVNQVRK RLDALRKNAT PPPQQQQPAA AAAAVAVKKE  180
NASPQLPPAA AEKTALEVAM EELQKQDWFS EIMMNPLAAH EEMMGHHLSF LELAGSGFLG  240
GAWPDAYFPV N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLEWIANDSARRATLKKRR
22226KKRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-32M-type_MADS family protein