PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA62647.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family C3H
Protein Properties Length: 405aa    MW: 45880.1 Da    PI: 5.0079
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA62647.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.86e-0698121226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 k  lC ff + G+C  G +CkF+H+
  PKA62647.1  98 KSILCEFFKA-GQCAKGFKCKFSHD 121
                 6679**7777.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    
MPPKQQSKAE LAKKQKIVED KTFGLKNKSK SKNVQKYVQS LQQAVQPKPD ASKMAAKAMM  60
SSLFVKKKEE EKTREKELND LFKVAVSQAK VPVGVDPKSI LCEFFKAGQC AKGFKCKFSH  120
DLNVQRKGEK IDIYSDKRDQ ERDVMEVVGN PLLGIVRKDG LNSFKWGLGI TVCKYFLETV  180
EKKQYGWFWV CPNGGKDCHY RHALPPGYIL KSQMKALLDE ETEKISIEEE IEDQRTLGSC  240
IYAAEARALM GCEESAEMGI VILYHGLRAK VPTSTPMTPE LFQEWKRKKM AEKEVALSAT  300
QAERAKNDRM SGRELFLSDA SLFVDDAEAY EKYHREEFDD LDMVKKIDDQ DGQPDEPSSS  360
KADHDESMLA DDDEEDDDDL DIDELNELEA NLSKAALSIR ESAFG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-128C3H family protein