PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA62682.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

NF-X1

Protein Properties

Length: 877aa MW: 97560.4 Da PI: 8.3544

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA62682.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	16.7	1.6e-05	184	202	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG H C lCH+GpCppCp+ PKA62682.1 184 CG-HECLLLCHPGPCPPCPK 202 .*************96 PP
2	zf-NF-X1	16.1	2.5e-05	289	308	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CGkH C++ CH GpC+ Cp+ PKA62682.1 289 CGKHNCNRGCHSGPCGDCPL 308 ******************95 PP
3	zf-NF-X1	18.9	3.3e-06	417	442	1	20
zf-NF-X1 1 CG......kHkCqklCHeGpCppCpq 20 CG +HkC +lCH+GpC pCp+ PKA62682.1 417 CGrkllckNHKCPSLCHRGPCAPCPL 442 777777779***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 877 aa Download sequence
MATAVAQPAV VTNSFLSDSD TGGSSSGSDD AATFSRTSAL EDSIFAAYLQ ISGGRSTTQD 60 LAKIRSFLSA ASGRSGALVS CLICLERIRP SDPVWSCFSG CHAVFHLPCI QNWANQSSHR 120 PASSSSVSSS SDWHCPKCRL SYPRTLIPRS YSCFCGKLFD PPCDPWILPH SCGEVCGRPL 180 RGNCGHECLL LCHPGPCPPC PKLVTARCFC GSHEDARRCA QKLFSCNQPC PKALPCRTHW 240 CPEYCHEGPC PPCQVRGFYR CACGKTEEER VCADRGFRCD KPCEGILLCG KHNCNRGCHS 300 GPCGDCPLQG RRTCPCGKKE YKGAPCDADV PTCGSTCEKT MSCGLHRCPE RCHRGSCVKT 360 CRTVVFKACR CGSLKKEVPC YQDLICERKC LRMRDCGRHA CKHRCCNGEC PPCQEMCGRK 420 LLCKNHKCPS LCHRGPCAPC PLMVTISCLC GETYYEVPCG VEMNQKPPKC LKPCRIPRLC 480 RHKSECRPHR CHYGACPPCR MTCGEKLMCG HTCKQRCHGP MPPSNPDFTL KPKRKKVEKI 540 IECIPGSPCP PCQEIVWVAC LGQHIGEERP MVCSQKAPYS CQNLCGSLLS CGNHYCTKSC 600 HSMKYQSSTL DEHGNCKYAE NELAESCEEC LFPCQKVREP ACSHPCPMPC HSDACPPCKV 660 LLKRACYCGA MVHAFECSYY NSLSGVEQQR IRSCKGPCHR KLLNCPHLCS EICHPGQCPA 720 IDQCIKKVYA RCACNNIKNE WLCREAQSAH RAAGRDPKDV AKSQFGVGLI PCNADCASRV 780 NVVDADLQLR KVKVLQNEDT VAPVVPKRRK RRERVQGTRQ TSKFQTFKSY LWRCLLFTLL 840 LFIVCVGFYY GHKGLLWLSD WMYEMEERRN RKGFSRF

Sequence ? help Back to Top

Protein Sequence Length: 877 aa Download sequence

MATAVAQPAV VTNSFLSDSD TGGSSSGSDD AATFSRTSAL EDSIFAAYLQ ISGGRSTTQD  60
LAKIRSFLSA ASGRSGALVS CLICLERIRP SDPVWSCFSG CHAVFHLPCI QNWANQSSHR  120
PASSSSVSSS SDWHCPKCRL SYPRTLIPRS YSCFCGKLFD PPCDPWILPH SCGEVCGRPL  180
RGNCGHECLL LCHPGPCPPC PKLVTARCFC GSHEDARRCA QKLFSCNQPC PKALPCRTHW  240
CPEYCHEGPC PPCQVRGFYR CACGKTEEER VCADRGFRCD KPCEGILLCG KHNCNRGCHS  300
GPCGDCPLQG RRTCPCGKKE YKGAPCDADV PTCGSTCEKT MSCGLHRCPE RCHRGSCVKT  360
CRTVVFKACR CGSLKKEVPC YQDLICERKC LRMRDCGRHA CKHRCCNGEC PPCQEMCGRK  420
LLCKNHKCPS LCHRGPCAPC PLMVTISCLC GETYYEVPCG VEMNQKPPKC LKPCRIPRLC  480
RHKSECRPHR CHYGACPPCR MTCGEKLMCG HTCKQRCHGP MPPSNPDFTL KPKRKKVEKI  540
IECIPGSPCP PCQEIVWVAC LGQHIGEERP MVCSQKAPYS CQNLCGSLLS CGNHYCTKSC  600
HSMKYQSSTL DEHGNCKYAE NELAESCEEC LFPCQKVREP ACSHPCPMPC HSDACPPCKV  660
LLKRACYCGA MVHAFECSYY NSLSGVEQQR IRSCKGPCHR KLLNCPHLCS EICHPGQCPA  720
IDQCIKKVYA RCACNNIKNE WLCREAQSAH RAAGRDPKDV AKSQFGVGLI PCNADCASRV  780
NVVDADLQLR KVKVLQNEDT VAPVVPKRRK RRERVQGTRQ TSKFQTFKSY LWRCLLFTLL  840
LFIVCVGFYY GHKGLLWLSD WMYEMEERRN RKGFSRF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	806	812	PKRRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	0.0	NF-X1 family protein