PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA62689.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C3H

Protein Properties

Length: 629aa MW: 68197.8 Da PI: 6.8744

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA62689.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.2	2.1e-06	262	282	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C Gd C +aHg PKA62689.1 262 PCPEFRK-GSCLKGDACEYAHG 282 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 629 aa Download sequence
MCSGPRNAQS VPPLAADGIS MDGKTSPVEA SESAALLLEL SAADDIAAFK QAVEESDLPL 60 DASGLWYSRT IGPASSPERW MRYEQRTPIM IAALYGSTSV LSYILSRKSV DVNLPCGSDG 120 ATALHCAAAG GSVSSIQAVK LLIEASADVD SVDANGNRPG DVIAKQFSAI RARDLEVLLK 180 APCPRASSPS RTNGEKKEYP PDLTLPDIKN GIYGTDEFRM FTFKVKPCSR AYSHDWTECP 240 FVHPGENARR RDPRKFSYSC VPCPEFRKGS CLKGDACEYA HGVFESWLHP AQYRTRLCKD 300 EIGCNRRVCF FAHKPEELRM VNPTTASVSG LVPPSPRSPQ MGVASLEMAA ALMMLQSTPA 360 SPRSPSTSSA MSSPWMSPRG TLAQPPSLQL PSSRLKSALS ARDLEFDFDL MGLEAYQQKL 420 LDGVSHIASP RSNRIINSTP NYNDPFGSLD PAMLSGPYAS SLPSSPASNS SSAFGLDHSM 480 AKAIINSRQA AFAKRSQSYI DHGQVHRHSS LAPPPSSTAE SLGLFDWNSP DGKLDWGIQV 540 DELNKLRNSP ALNYRNTASS NLCGTLSSPA IPEVEPSWVP SVGPAPISRP AVEQKQQQKQ 600 KQQYQRNGAG ELLNWEQIYA EQEQMINLE

Sequence ? help Back to Top

Protein Sequence Length: 629 aa Download sequence

MCSGPRNAQS VPPLAADGIS MDGKTSPVEA SESAALLLEL SAADDIAAFK QAVEESDLPL  60
DASGLWYSRT IGPASSPERW MRYEQRTPIM IAALYGSTSV LSYILSRKSV DVNLPCGSDG  120
ATALHCAAAG GSVSSIQAVK LLIEASADVD SVDANGNRPG DVIAKQFSAI RARDLEVLLK  180
APCPRASSPS RTNGEKKEYP PDLTLPDIKN GIYGTDEFRM FTFKVKPCSR AYSHDWTECP  240
FVHPGENARR RDPRKFSYSC VPCPEFRKGS CLKGDACEYA HGVFESWLHP AQYRTRLCKD  300
EIGCNRRVCF FAHKPEELRM VNPTTASVSG LVPPSPRSPQ MGVASLEMAA ALMMLQSTPA  360
SPRSPSTSSA MSSPWMSPRG TLAQPPSLQL PSSRLKSALS ARDLEFDFDL MGLEAYQQKL  420
LDGVSHIASP RSNRIINSTP NYNDPFGSLD PAMLSGPYAS SLPSSPASNS SSAFGLDHSM  480
AKAIINSRQA AFAKRSQSYI DHGQVHRHSS LAPPPSSTAE SLGLFDWNSP DGKLDWGIQV  540
DELNKLRNSP ALNYRNTASS NLCGTLSSPA IPEVEPSWVP SVGPAPISRP AVEQKQQQKQ  600
KQQYQRNGAG ELLNWEQIYA EQEQMINLE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-144	C3H family protein