PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA62701.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 233aa MW: 25240.3 Da PI: 8.6615

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA62701.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.1	1.7e-17	9	54	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v+++G ++W++I++ ++ gR++k+c++rw + PKA62701.1 9 KGSWSPEEDAMLMRLVELHGARNWTLISAGIP-GRSGKSCRLRWCNQ 54 799***************************.*********985 PP
2	Myb_DNA-binding	51.8	1.9e-16	63	105	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ed +v a++++G++ W+tIar ++ gRt++ +k++w++ PKA62701.1 63 PFSPAEDAVIVAAHARYGNK-WATIARLLP-GRTDNAIKNHWNST 105 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence
MGESEEKIKG SWSPEEDAML MRLVELHGAR NWTLISAGIP GRSGKSCRLR WCNQLSPEVH 60 HRPFSPAEDA VIVAAHARYG NKWATIARLL PGRTDNAIKN HWNSTLRRRR RRRRAAAAAS 120 GSASVSALSG PEESESESGG KRQCLREDSS TADPETALSL SPPGESTAAV AAGDGGGGAG 180 RRWEDELKDP CVVLMMRDMI AEEVRRYMSR LRVEAGGGLP VIIKAEQGSN GQD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	112	RRRRRR
2	107	113	RRRRRRR
3	107	114	RRRRRRRR
4	108	113	RRRRRR
5	108	114	RRRRRRR
6	108	115	RRRRRRRR
7	109	114	RRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	2e-54	MYB family protein