PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA62815.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family C3H
Protein Properties Length: 501aa    MW: 54597.5 Da    PI: 6.9346
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA62815.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.6e-07246266526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C+ f+r G+C++Gd C +aHg
  PKA62815.1 246 PCPEFRR-GQCPRGDLCEYAHG 266
                 8******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    
MGFPAGDDSV AELLEFAAED DDVSFRLAVD RDPAALHAAG RWYGRCRRSG RMKLLFRTPL  60
MIAATYGSLE VLRFILSLSS GADVDRRCGV DGVTALHCAA SGCATTAALV VSLLIEAGAD  120
ANTVDAFGLR PFDVISITPT LSSVRSSLEG LLGKCSPPLS PSSDSTSSSS SSAAEEKKEK  180
KTYPIDPSIP DINSSIYASD DFRMFAFKIQ PCSRAYSHDW TECPFVHPGE NARRRDPRRF  240
QYGCTPCPEF RRGQCPRGDL CEYAHGVFEC WLHPTLYRTR LCKDGGNCGR RVCFFAHSSN  300
ELRSPHVQVS NTKLSRLRIP CSKELDINLL SPSGVHNGRL GLLNLDDKSV NCSSPRFQCE  360
YWSASLSPSG NLQHHQSLLL PSNGCNVLSP RSLNVINSVN STLGMAPRSN GTVAVSSPLS  420
SYSDFDQEKQ QRSLLLSNLN RNLPRSPNCE EVARSIGAGE LDLSWVQSLV GKAEVAPNSA  480
IDEEHAILGA WLEEVHQKPA Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-107C3H family protein