PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA62853.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family MYB_related
Protein Properties Length: 283aa    MW: 31420.5 Da    PI: 9.6273
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA62853.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-1692137148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+  +eE++l+v+++++lG++ W++Ia +++ gRt++++k++w+++l
       PKA62853.1  92 RGNIGPEEEDLIVRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 137
                      677889****************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    
MPLPSLSPSD PTAAQLRAVA APLRTAAGDL AQPPTAAAGH STARCSSAAG GRAGWRDYCA  60
VAELGREGER LLRCGKSCRL RWMNYLRPDI KRGNIGPEEE DLIVRLHRLL GNRWSLIAGR  120
LPGRTDNEIK NYWNSHLSKK LRSQGFNILK QGAPRSKRAA TLNKSNKKKK KNNDIDITIN  180
NGTEDQNGVR VYAPKPTRFT ARLAENSEEL SLGFGKRADQ DKFGSDSSSY EEEEDLQFDL  240
LWSTADLLLD PKDMDLSDAR ENTVPPRVNM LLPEPMQLRD ALT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-41MYB family protein