PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA62879.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family C2H2
Protein Properties Length: 308aa    MW: 33515.4 Da    PI: 6.5606
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA62879.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000156587123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                + C+ C k+F + + L+ H+r H
  PKA62879.1 65 HCCTVCEKRFASIMALNGHMRIH 87
                5699*****************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MENKQTRGNS DKERRPVLPL LFLKLSNGVV VSSRWVQRES INGSSGSTTT TTGDHGHNDG  60
NGLHHCCTVC EKRFASIMAL NGHMRIHKDR SLDDHGELEA AEALLLLSNS SPADQGKEED  120
LSEKKKHVCD ICCEGVETGQ ALGGHKPSHF HREKRRRRLP AAEEPKEVQR VEEAEKRGHV  180
CRICQASFAT GQALGGHMSL HLIRGRRVAA PALPPAPPLL PETSSMSPAT LVVSESSSPS  240
SLERGEVREL AVMVAKDSTC SSSQGAAEAE QGIAHQIDLN EPAEEKAQSN GTEEPLDFYY  300
FIGFNDKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154159KRRRRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43170.11e-10C2H2 family protein