PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA62986.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family MYB
Protein Properties Length: 279aa    MW: 31445 Da    PI: 5.2576
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA62986.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.4e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWT+eEdellv ++k +G g+W++ +++ g+ R++k+c++rw +yl
       PKA62986.1 14 KGRWTKEEDELLVSYIKAHGEGSWRSLPKKAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding46.77.6e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ ++eE++ +v++ + lG++ W+ Ia +++ gRt++++k++w+++l
       PKA62986.1  67 RGNISKEEEDTIVQLRATLGNR-WSVIAGRLP-GRTDNEIKNYWNSHL 112
                      7899******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MGRAPCCEKI GLKKGRWTKE EDELLVSYIK AHGEGSWRSL PKKAGLLRCG KSCRLRWINY  60
LREDLKRGNI SKEEEDTIVQ LRATLGNRWS VIAGRLPGRT DNEIKNYWNS HLSKKVQHSN  120
KTEEASNPDA TSKRKGGRPS RSGKKKKPID KALLKKNKGT ESRDASPSEE NESATSLSSS  180
GEEKESGAPA SAEGREEEKV GDVEVTKGEE PSLEEFERLV DWDLEDIALR LWEWEGEGEI  240
WPWEGLESKG DFGGSLENVE FGAFKDDYVD NSWLLSDVF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133147KRKGGRPSRSGKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.13e-66MYB family protein