PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA63042.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family M-type_MADS
Protein Properties Length: 219aa    MW: 24600.8 Da    PI: 9.1701
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA63042.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF466.8e-151150342
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                i n+  r  t+ kRr g++KK  ELSvLC++ ++ +++++
  PKA63042.1 11 ITNEATRRATLKKRRRGLMKKVRELSVLCGVSACAVVYAP 50
                8999********************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MARKKISLAY ITNEATRRAT LKKRRRGLMK KVRELSVLCG VSACAVVYAP PDPKPEVWPS  60
TEEAAEILRK FCCMPDVDKA RKMMNQESFL LQRQNKLQEQ LRRLTHENDE LAAANLLRQC  120
LAGRPASTLC REEVFVLLCL IERRSKAVQV RLDQLRAQAE RFGSSPEIYL PGGQSPPSLP  180
LPAPLMLPAP SPLQVKDFTD PIGFDSAAIE AMLLCDWLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKISLAYITNEATRRATLKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-31M-type_MADS family protein