PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA63098.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

HD-ZIP

Protein Properties

Length: 229aa MW: 26303 Da PI: 4.7394

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA63098.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.9	5.3e-21	71	124	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe ++++ e++ eLAkklgL+ rqV vWFqNrRa++k PKA63098.1 71 KKRRLTPEQVHLLERSFEAESKLEPERKSELAKKLGLQPRQVAVWFQNRRARWK 124 5668*************************************************9 PP
2	HD-ZIP_I/II	131.9	2.4e-42	70	161	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqv+lLE+sFe+e+kLeperK+ela++LglqprqvavWFqnrRAR+ktkqlE+d+++Lk++ydal +++++L k++++Lr++l PKA63098.1 70 EKKRRLTPEQVHLLERSFEAESKLEPERKSELAKKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKSSYDALLTNHDSLLKDNDRLRTQLL 161 69**************************************************************************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence
MEFGRLSFDS TASNSTGHML ILGAGSGSPV FQGTRTMLGF EEGSNKQRRP FFTTSEDLLE 60 EEYYDEQVSE KKRRLTPEQV HLLERSFEAE SKLEPERKSE LAKKLGLQPR QVAVWFQNRR 120 ARWKTKQLER DFDRLKSSYD ALLTNHDSLL KDNDRLRTQL LSLTEKLREK EHDCSGDSYF 180 QESLMESGTG CSVEPVRGGM GSEDDDGGSS NDDRVFEDTP NGENWWVWS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	127	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	2e-62	HD-ZIP family protein