PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA63220.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 256aa MW: 29113.6 Da PI: 5.413

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA63220.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00052	64	86	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H PKA63220.1 64 YSCTFCLREFRSAQALGGHMNVH 86 99*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence
MLMSAMEQTR YWMWARSKLM GRPVVNSFLL PTSSSSPSES WEELAFAQDT AGEAGGCVWP 60 PRSYSCTFCL REFRSAQALG GHMNVHRRDR ARLKLASTSP GSGDNREEED DAFNLFVGNN 120 IKQNPNPIAC PLVIQENNCS KPEDLFASLM DPTSLELGRK IWESADQAGM IRRRRRNYND 180 DDYDDDDDDQ KADKKKLKII RTDHHHLHDH LIDFKSEQVV LKLSSSSSTT VEELDLELRL 240 GDPPKTKQNQ SIIVIE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	172	198	RRRRRNYNDDDYDDDDDDQKADKKKLK
2	173	199	RRRRRNYNDDDYDDDDDDQKADKKKLK
3	174	200	RRRRRNYNDDDYDDDDDDQKADKKKLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06070.1	2e-25	C2H2 family protein