PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA63598.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C3H

Protein Properties

Length: 326aa MW: 37187.1 Da PI: 7.0544

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA63598.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.4	8.5e-12	189	214	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C +Gd CkF+H+ PKA63598.1 189 YQPDICKDYKETGYCGFGDACKFMHD 214 67789********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence
MDDNGGEVCN FFRKSLRKNN IRKRTCTESD EDEENRDKEA QNSNLHQRPR KAPSVDNKLH 60 FSSAQSSKKP IEEDDAEDEG KSKGTLFHFE SSKEIQVQND SRATASLQTE TEFDRDARAI 120 RERVLKQAEE NLRGNSARGV DKVYRGIHGY TDYKAGFRRE QTVAVGKASG AHGPLRASAF 180 IRTSARFDYQ PDICKDYKET GYCGFGDACK FMHDRGDYKS GWQMEKEWEE KEKERKRELA 240 LGGAGDDGGE GSDDDDDGGD LPFACFICRR PFEDPVVTKC KHYFCEHCAL KHHSKNKKCF 300 VCNTPTLGIF NTAHEIRKRI AQERKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-136	C3H family protein