PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA63669.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family C3H
Protein Properties Length: 488aa    MW: 53588.3 Da    PI: 8.5951
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA63669.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.32.6e-08253273526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  C++f+r G Ck+G+ C FaHg
  PKA63669.1 253 ACPDFRR-GGCKRGEACEFAHG 273
                 7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    
MTENLLFPVS RKRMQHCDRN SAKEYVEISR SIRHVSSNGP PWAPPHHPHA CRNFPMRHVS  60
HHQSPKSPTD CPSFPPPISN GVNSSNHGLS TLPEFKLTTV NFVTPIRFIF SLHLRLPSGE  120
IMMMGEGTSR NPAVHVPSWS PFDDQATSMG FPLQVSGAGD YLLNEAGLAA LAALQRYLPA  180
NEAAEAEAEG EYLAELADPP VDAYSCDEFR MYEFKVRRCA RGRAHDWTEC PYAHPGEKAR  240
RRDPRKHHYS GTACPDFRRG GCKRGEACEF AHGVFESWLH PARYRTQPCK DGTACRRRVC  300
FFAHTPEQLR VLPPQQQSPR APESYDGSPL RHNALDGYFH KGLISSSPTS TLVSPPASPP  360
RDSPPASPSA VGVRRASWPA GSAVNEVAAS LRKLRLSKVS SMPSSWGGFC SPPPTPSRPA  420
TASGRGGSFL DLDGFPEEEV HVERVESGRA LRAKMFERLS KETGLGRYGG EPAGAASPDV  480
GWVSELVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-72C3H family protein