PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA63712.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family HD-ZIP
Protein Properties Length: 764aa    MW: 83140.2 Da    PI: 5.7599
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA63712.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.46.9e-2090145156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++e+e++F+++++p+ ++r+eL+++l+L+  qVk+WFqN+R+++k
  PKA63712.1  90 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELDLEPLQVKFWFQNKRTQMK 145
                 688999***********************************************999 PP
2START225.71.4e-702784981206
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 ela +a++el+++a+++ep+W        e +n++e+lq+f+++ +      ++ea+r+++vv+m++++lve+l+d + qW++++     +a tlev+s
  PKA63712.1 278 ELAVAAMEELIRMAQLGEPLWAPGIdgstEALNEEEYLQSFPRGIGpkpfgLKSEASRETAVVIMNHVNLVEILMDAN-QWSTMFSsivsRALTLEVLS 375
                 57899*****************99999999*************999********************************.******************** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                 +g      galq+m+ae+q++splvp R+++fvRy++q+++g+w++vdvS+ds ++ p    v+R++++pSg+li++++ng+skv+wvehv++++r +h
  PKA63712.1 376 TGvagnynGALQVMTAEFQVPSPLVPtRESYFVRYCKQHPDGTWAVVDVSLDSLRPSP----VMRCRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRAVH 470
                 ********************************************************98....7************************************ PP

                 HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 179 wllrslvksglaegaktwvatlqrqcek 206
                 ++++slv+sgla+gak+wv+ l+rqce+
  PKA63712.1 471 NIYKSLVNSGLAFGAKRWVSILDRQCER 498
                 **************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    
MPAGIMIPAR HVPSMIGRNS GASGYGNSSA LTLGQLPIQH QLANMTPATM TTAESEMFRT  60
REEDFEGKSG SENIEGASGD DQDPNQRPKK KRYHRHTQHQ IQEMEAFFKE CPHPDDKQRK  120
ELSRELDLEP LQVKFWFQNK RTQMKTQHER QENSQLRAEN EKLRTENLRY KEALSNASCP  180
NCGGPAALGE MSFDEHHLRI ENARLREEID RISGIAAKYV GKPMASYPLL SPSISSRSPL  240
DVGGYGIPPS MANDIYGAGD LLRSVSGQSD VEKPMVVELA VAAMEELIRM AQLGEPLWAP  300
GIDGSTEALN EEEYLQSFPR GIGPKPFGLK SEASRETAVV IMNHVNLVEI LMDANQWSTM  360
FSSIVSRALT LEVLSTGVAG NYNGALQVMT AEFQVPSPLV PTRESYFVRY CKQHPDGTWA  420
VVDVSLDSLR PSPVMRCRRR PSGCLIQEMP NGYSKVIWVE HVEVDDRAVH NIYKSLVNSG  480
LAFGAKRWVS ILDRQCERLA SVMASNMPSG DVGVITTPEG RKSMLKLAER MVISFCGGVS  540
ASTTHQWTTL SGSGGEDVRV MTRKSVDDPG RPPGIVLNAA TSFWLPVAPK RVFDFLRDES  600
SRSEWDILSN GGVVQEMAHI ANGRDHGNCV SLLRVNSTNS NQSNMLILQE SCTDATGSYV  660
IYAPVDVVAM NVVLNGGDPD YVALLPSGFA ILPDGPTAGV HEALGSSGLP EVGSGGSLLT  720
VAFQILVDSV PTAKLSLGSV ATVNSLIACT VERIKAAVSG EGAQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein