PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA64047.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

LSD

Protein Properties

Length: 151aa MW: 16035.5 Da PI: 8.3193

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA64047.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	34.1	4.6e-11	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrt+L Y rGA+sVRCa+C t+ PKA64047.1 7 CRGCRTTLLYGRGASSVRCAVCYTI 31 9*********************886 PP
2	zf-LSD1	36	1.2e-11	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg C+t+L Y GA+sVRC++C+tV PKA64047.1 46 CGACHTMLLYASGATSVRCSCCNTV 70 ************************9 PP
3	zf-LSD1	41.8	1.8e-13	84	108	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg Cr +L+YP+GApsV+Ca+C+ V PKA64047.1 84 CGRCRRTLMYPFGAPSVQCAVCHYV 108 **********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence
MQSQITCRGC RTTLLYGRGA SSVRCAVCYT ITPVLPQGTD MAQLECGACH TMLLYASGAT 60 SVRCSCCNTV NLVRSANQLA YVTCGRCRRT LMYPFGAPSV QCAVCHYVTN IVTNYGGSQI 120 TSASLPNSKS QTVIVENPAS IDESGKPVIS C

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	8e-45	LSD family protein