PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA64068.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MIKC_MADS

Protein Properties

Length: 250aa MW: 28650.2 Da PI: 6.89

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA64068.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	83	1.8e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvtfskRr g+lKKA+EL vL+da+v +++fs++gk+y+y+s PKA64068.1 9 KRIENPTNRQVTFSKRRGGLLKKAHELAVLTDAQVGLVVFSTSGKMYDYCS 59 79***********************************************96 PP
2	K-box	78	2.4e-26	81	172	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++++ +++l+ e+++++ e++ Lq +++++ Ge+L+ L++++L+qLe++Le s++k+R +K++ll++q+e+l++ke+ l+++n++L + l+e PKA64068.1 81 QDHSSQQQLYCEITRIRHETDRLQATIKQFTGEELSGLTINDLNQLEDHLEFSVNKVRFRKHQLLHQQLENLRRKEHILEDQNNYLCRALAE 172 67788999******************************************************************************998765 PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence
MGRGKIEIKR IENPTNRQVT FSKRRGGLLK KAHELAVLTD AQVGLVVFST SGKMYDYCSP 60 ASSMREIIER YLKATNAHFD QDHSSQQQLY CEITRIRHET DRLQATIKQF TGEELSGLTI 120 NDLNQLEDHL EFSVNKVRFR KHQLLHQQLE NLRRKEHILE DQNNYLCRAL AEHHVAMEQQ 180 QAADHYEENK AREMGFLHEP SSLIGNFLSS VADDSAGNLL QLGPQVHGFQ LQPTQPNLQD 240 PALHGYALQL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23260.2	3e-57	MIKC_MADS family protein