PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA64073.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family M-type_MADS
Protein Properties Length: 237aa    MW: 26263.2 Da    PI: 8.3649
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA64073.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF641.6e-201963145
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                krie +  rqv fskRr g++KKA ELS+LC+ae+ +++fs+ gk
  PKA64073.1 19 KRIEREEARQVCFSKRRVGLFKKATELSILCGAEIGIVVFSPAGK 63
                79*****************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MATVGKKRQS MGRQKIPMKR IEREEARQVC FSKRRVGLFK KATELSILCG AEIGIVVFSP  60
AGKPFSFGHP SLDYIIKRFA GGDRIRGVGP MLAAQGIDCG ALQGLNINHA RLTEELEEQR  120
RRKEVLEASM EALRSSDHRR PLPWEADVHE MGMEELESFQ KALEVLWRNV ASRREEIEIM  180
MEVEYWRPAA APVAYGGGGY AGSCNGLYLT PPSLVPGGGG LADGFCSCGI ERAYFWG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.18e-36M-type_MADS family protein