PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA64079.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

NF-YC

Protein Properties

Length: 223aa MW: 24940.5 Da PI: 4.8928

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA64079.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	173.9	1.6e-54	67	170	2	102
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 l++fw++q ie++ +fknh+lPlarikki+kadedv+misaeaPv+++kace+file+tlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdivp PKA64079.1 67 LEAFWASQmheIEQTVEFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILEITLRSWMHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 165 689*9988889********************************************************************************** PP NF-YC 98 rdelk 102 rdelk PKA64079.1 166 RDELK 170 975 PP

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence
MEKSEQPHQP AIGVAPTAVQ IPMVVGAPAV VGSIPSLAAG PSPFQFAENQ PSYQQVQHLH 60 YQQQQLLEAF WASQMHEIEQ TVEFKNHSLP LARIKKIMKA DEDVRMISAE APVIFAKACE 120 MFILEITLRS WMHTEENKRR TLQKNDIAAA ITRTDIFDFL VDIVPRDELK EDGLGIPKAA 180 DSVPYYYVNV NPQPPVDQNA AGPPAMAFVW QQPVQQQQQM ADG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	145	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.1	9e-69	NF-YC family protein