PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA64494.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family Whirly
Protein Properties Length: 260aa    MW: 29067.2 Da    PI: 9.5008
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA64494.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly192.46.7e-60842212139
      Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlp 100
                 +yk+kaal v+++ p+f  ldsg++k++++G +ll++a+a ++r+ydW++kq+f+ls+ e+++l+ l++k++ceffhdp++++s+eGkvrk lkvePlp
  PKA64494.1  84 IYKGKAALAVEPKPPEFAPLDSGAFKVSKEGYILLQFAPASGTRQYDWNRKQVFSLSVGEIGTLMGLGAKDACEFFHDPFKGKSEEGKVRKFLKVEPLP 182
                 9************************************************************************************************** PP

      Whirly 101 dGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                 dG G+f+nlsv+n l++++es+++P++k+e  +l+s+++
  PKA64494.1 183 DGNGHFFNLSVQNRLMNVDESIYIPIAKSELIILNSAFN 221
                 **********************************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MPTLPSQIPL HSATTPSLVP QNPLRSRIFA PQILLPRKKQ LHVCCRRSDY FDQQRIASRT  60
PEENSFTSPS PGTLANRVYA GYTIYKGKAA LAVEPKPPEF APLDSGAFKV SKEGYILLQF  120
APASGTRQYD WNRKQVFSLS VGEIGTLMGL GAKDACEFFH DPFKGKSEEG KVRKFLKVEP  180
LPDGNGHFFN LSVQNRLMNV DESIYIPIAK SELIILNSAF NFILPYLLGW HAFADTIKPE  240
DSSRNNFTSS RSGAELEWGR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-106Whirly family protein