PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA64497.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

HD-ZIP

Protein Properties

Length: 320aa MW: 36606 Da PI: 4.6266

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA64497.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.5	1.3e-19	108	161	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ ++q++ Le+ Fe +++++ e++ +LAk+lgL+ rqV +WFqNrRa++k PKA64497.1 108 KKRRLGADQVQSLEKSFEIENKLDPERKIKLAKELGLQPRQVAIWFQNRRARWK 161 45578899*********************************************9 PP
2	HD-ZIP_I/II	128.9	2e-41	107	199	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl ++qv++LE+sFe e+kL+perK +la+eLglqprqva+WFqnrRAR+ktkqlEkdye+Lk+ yd lk e e+L ke+e+L++e+++ PKA64497.1 107 EKKRRLGADQVQSLEKSFEIENKLDPERKIKLAKELGLQPRQVAIWFQNRRARWKTKQLEKDYEVLKADYDDLKVEYENLLKEKEKLQSEVTT 199 69**************************************************************************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence
MAERRVHGGS NMGFLLQREG ISPETIEAML NSSSSSGGFQ GTSLHLQFLF SSFRFCFNSS 60 VPIISASSSM VNVDDFYTNT SDLACYRLLD VEQAGEEGLE DYLQQPEKKR RLGADQVQSL 120 EKSFEIENKL DPERKIKLAK ELGLQPRQVA IWFQNRRARW KTKQLEKDYE VLKADYDDLK 180 VEYENLLKEK EKLQSEVTTL SNKLLLKEKN MKNSMKLEKS SPPPPKSEPD SAIKVRSMDA 240 PNFRFKQEDL SSVNSTVNDS CSPPLVEPAD SSNVFEPDQS DLSYAEEEEE VKGYHFLRLE 300 DSSSQYVFPV EDQAFLFWPF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	108	137	KKRRLGADQVQSLEKSFEIENKLDPERKIK
2	156	164	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	9e-36	HD-ZIP family protein