PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA64545.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family GRAS
Protein Properties Length: 475aa    MW: 50999 Da    PI: 4.6574
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA64545.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS393.42.4e-120484111373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgd..pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                 lv+lL++cA+ ++ gd  la +++++++ l    g    + ++a +f+eAL +rl +      +  pps++++   +e    +++f+e+ P+lkf+h+t
  PKA64545.1  48 LVHLLVTCADSIQRGDRLLAGTMIEEMRLLMPRVGAsfGIGKVAGFFVEALDRRLCS------DLTPPSSSQP--PEEDEILYHYFYEAGPYLKFAHFT 138
                 68****************************99999623689***************9......4445555543..3444457799************** PP

        GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 aNqaIlea++g++r+H++Df+++qGlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++ +++l+e+g rLa++A+++gvpf f+ +va  l+d+++++L  
  PKA64545.1 139 ANQAILEAFNGHDRLHVVDFSLMQGLQWPALIQALALRPGGPPFLRLTGIGPPSPDGSDKLREVGLRLADLASSVGVPFAFRGVVAAGLDDVQPWML-- 235
                 *************************************************************************************************.. PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres...eerikvErellgr 292
                    EalaVn+vlqlhrl+ e++s    +d+vL+ v +l+P vv++veqeadhn++ Fl+rf+eal yys+lfdslea+ +  s    + +++ +++l++
  PKA64545.1 236 ---EALAVNSVLQLHRLVGEPASPGP-IDSVLSWVGRLRPSVVTLVEQEADHNKPAFLDRFTEALFYYSTLFDSLEAGSGCGSgpaADLASLAEVYLKK 330
                 ...***************88777666.************************************************999888887777888999****** PP

        GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 ei n+v+cegaer+erhe l++Wr+r++++G+ pv+l+++a  qa++ll  ++++gy+vee +g+l+lgW++r+L+s+SaW
  PKA64545.1 331 EIYNIVCCEGAERVERHEPLASWRSRMGRSGLLPVHLGSNAFRQASMLLMLFSGEGYSVEEVDGCLTLGWHGRALISASAW 411
                 ********************************************************************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    
MIAAAAAGIP PEFLCSDAVH YNPSDLAAWV DSVAMLTDLP PEDAGIRLVH LLVTCADSIQ  60
RGDRLLAGTM IEEMRLLMPR VGASFGIGKV AGFFVEALDR RLCSDLTPPS SSQPPEEDEI  120
LYHYFYEAGP YLKFAHFTAN QAILEAFNGH DRLHVVDFSL MQGLQWPALI QALALRPGGP  180
PFLRLTGIGP PSPDGSDKLR EVGLRLADLA SSVGVPFAFR GVVAAGLDDV QPWMLEALAV  240
NSVLQLHRLV GEPASPGPID SVLSWVGRLR PSVVTLVEQE ADHNKPAFLD RFTEALFYYS  300
TLFDSLEAGS GCGSGPAADL ASLAEVYLKK EIYNIVCCEG AERVERHEPL ASWRSRMGRS  360
GLLPVHLGSN AFRQASMLLM LFSGEGYSVE EVDGCLTLGW HGRALISASA WVVSDDTPPP  420
PPAPPVAGNV ILNYDDSRGF RFGESVTIGS SSSSSNHSIT GGVGSQREQC VNVNC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-135GRAS family protein