PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA64733.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family MYB
Protein Properties Length: 862aa    MW: 95566.7 Da    PI: 6.3212
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA64733.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.42.2e-20163209148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEde+l +av+++ g++Wk+Ia+ ++ gRt+ qc +rwqk+l
       PKA64733.1 163 KGQWTPEEDEILRKAVERYKGKNWKRIAESFP-GRTDVQCLHRWQKVL 209
                      799*****************************.************986 PP
2Myb_DNA-binding58.71.3e-18215261148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEd+++v+ v+++G+  W+tIa+ ++ gR +kqc++rw+++l
       PKA64733.1 215 KGPWSKEEDDIIVEMVNKYGPTKWTTIAQALP-GRIGKQCRERWHNHL 261
                      79******************************.*************97 PP
3Myb_DNA-binding49.11.3e-15267309145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE+  l++a++ +G++ W+   ++++ gRt++ +k++w+
       PKA64733.1 267 KEAWTEEEEIALIRAHQIYGNR-WAELTKYLP-GRTDNAIKNHWH 309
                      579*******************.*********.***********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 862 aa     Download sequence    
MICSLGLPNT LDTKFEELQE IYSPRGLHCH RWKDSETRRK RFKQKSHIPV FFSLPGNFEN  60
FTRRYRSSTV CGLRPRSPKL LFFLADLRMS ESDLKKGHEK EESSSITALH EDERVGSCSS  120
SFPDGTTEAT NSSSVQDGSE SEFQRKPLPL HGRTTGPKRR STKGQWTPEE DEILRKAVER  180
YKGKNWKRIA ESFPGRTDVQ CLHRWQKVLN PSLVKGPWSK EEDDIIVEMV NKYGPTKWTT  240
IAQALPGRIG KQCRERWHNH LNPAINKEAW TEEEEIALIR AHQIYGNRWA ELTKYLPGRT  300
DNAIKNHWHS AVKKRVDAYL ASGLLPQHPV LTLTATGQRK IHNNSCNGIL DVKDSSEHGT  360
TLLVSHQSDC NKATSAMLAG CSNPGKFVTI KEAPDSHQPN FSVGCHGTGE LSEKSLQETG  420
GSGNEVKQPS QAADFNGMPT LFQSQIFEKQ DSCLISPPVC HNEEAFDMHP SSPVLGIDQF  480
INSFLEDPET CTRTNLGCSS HDQSSGTYWK LAACSYPING DSNSSCSAPR VTEPKSLIHD  540
NADQQQGCQT LDQENEGLEG MLNKINDDGN KISCLSLESE KKIQSEKVVP NESTDIRSVK  600
FSDSGSLFYE PPCIQSLENP FLRCDIVSGD LHPAFSPFGL RQLTMSSASR NVWDSPSRDD  660
NPSRVLKKAA KNFASTPSIL KKRTCELFSP SQDKRSDKKS HTDTIGELSD ACIDDILGAC  720
DASTINFIHD ILDSLCDPTI NSETLANQNE FVTNGISGTT FCPANMQGKM EAYGFEANVP  780
LNVASDTIEN ECGVLVERNS TAFDSFCGNS IFLTPGVCGF KHSPRPVNVM ALKYPSTSSE  840
NTQAIVDNFT TSIDAGIENS SM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.21e-103MYB family protein