PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA65040.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family Whirly
Protein Properties Length: 273aa    MW: 29892.4 Da    PI: 10.4161
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA65040.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly174.22.9e-541122491138
      Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePl 99 
                 s++k+kaal v +  + f+++d+g++k++r+G +ll++ +a+++rkyd ekkq falsa ev+ l++l++ esc+ffhdp++k+s eG+++k+l v P+
  PKA65040.1 112 SIFKGKAALVVTPLPARFSKMDTGSVKVDRKGVVLLKFLPAIGQRKYDSEKKQIFALSASEVGCLISLGPAESCDFFHDPSMKSSLEGQIKKTLTVCPI 210
                 79************************************************************************************************* PP

      Whirly 100 pdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138
                  +G+G+f+nlsv n ++k+ne++svPv+kaef+v+r+++
  PKA65040.1 211 GEGAGYFFNLSVLNAIQKTNERLSVPVTKAEFSVMRTAF 249
                 *************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    
MPWSMGLVRK EERGGGGEVD QGRVGRCRRA GPIGLSGRER KRKSRSLCRE VSSPWEEGNR  60
QRCLCRLGLG LGQISTACSL TRQLRYVRDA SWSYNWIAQF SISSGKAYAD FSIFKGKAAL  120
VVTPLPARFS KMDTGSVKVD RKGVVLLKFL PAIGQRKYDS EKKQIFALSA SEVGCLISLG  180
PAESCDFFHD PSMKSSLEGQ IKKTLTVCPI GEGAGYFFNL SVLNAIQKTN ERLSVPVTKA  240
EFSVMRTAFT SLGSAQGRCW IRSAKANGDE NGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-59Whirly family protein