PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA65297.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family LBD
Protein Properties Length: 247aa    MW: 26550.2 Da    PI: 8.9905
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA65297.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.27.1e-304106198
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +l+l++  pe+ r+++++sl+yeA+ r+ +P+yG+vg++ ++++ql+q+++e 
  PKA65297.1   4 SCNGCRVLRKGCSENCSIRPCLqwirnPESQANATVFLAKFYGRAGLLNLINVGPEHVRPAIFRSLLYEACGRIVNPIYGSVGLLCSGSWQLCQSAVES 102
                 6***********************************************************************************************998 PP

      DUF260  95 allk 98 
                 +l++
  PKA65297.1 103 VLRG 106
                 8766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MRISCNGCRV LRKGCSENCS IRPCLQWIRN PESQANATVF LAKFYGRAGL LNLINVGPEH  60
VRPAIFRSLL YEACGRIVNP IYGSVGLLCS GSWQLCQSAV ESVLRGSPVV PISSETASSW  120
PAPPIKVYDV RHAIKKAGVR AAAAELHKFG KGRTRFKRTG GGAGFPEAKT SPEISGQQWC  180
FNSTVDWQRA PSHESAGSHS ADAVFSMETM EASQVSQGET SYSEAEVVGL ELSLRLPSPS  240
PRSAPAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-76LBD family protein