PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA65491.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

bHLH

Protein Properties

Length: 336aa MW: 36207 Da PI: 12.0787

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA65491.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.5	4.1e-12	122	167	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq PKA65491.1 122 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 167 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence
MLSAVPSWPD LPKSTWDLAG ASVGKPAFDE SSQLASRLRQ YQISGGSGSM PLFSGFGGAS 60 LRQPANPPTA AHFVQPQTAS VHHQSFGGAP PQATSVAASA GGGTCPPRQR VRARRGQATD 120 PHSIAERLRR ERIAERMKAL QELVPNANKT DKASMLDEII DYVKFLQLQV KVLSMSRLGG 180 TAAVGPLVAE ISSEVGFLAG DDGGGGGDGG EREHDGSGTP GSEADGGGHG LGDAVPPGQR 240 PLPHAHLPRL RHLHRHLPPP LRPRRRRPSG PRTPGGGRRA AFPELVRADS ALRRGGQHWR 300 CRRRRRHRRL AVLQQRRRLR LQTLETTLEI GRRRSP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	132	RLRRER
2	294	306	RGGQHWRCRRRRR
3	302	309	RRRRRHRR
4	302	318	RRRRRHRRLAVLQQRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	1e-33	bHLH family protein