PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA65494.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family ARR-B
Protein Properties Length: 646aa    MW: 71747.1 Da    PI: 5.9885
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA65494.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like902.1e-28207260155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  PKA65494.1 207 KPRVVWSAELHRKFVAAVNQL-GIDKAVPKRILDLMNVEKLTRENVASHLQKYRL 260
                 79*******************.********************************8 PP
2Myb_DNA-binding39.61.2e-12209259148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r  W++e++ ++v av+qlG +   +k+I   m+ +++t++++ s++qky+
       PKA65494.1 209 RVVWSAELHRKFVAAVNQLGIDkaVPKRILDLMNvEKLTRENVASHLQKYR 259
                      678********************************99*************7 PP
3Response_reg73.11.1e-24171251109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+ + +++l+++l + +y +v+++ ++e al++l+e++  +Dl++ D+ mp++dG++ll+     e++lp+i+++++ge + + + +  Ga 
    PKA65494.1  17 VLAVDDDLTCLKVLESLLLRCQY-HVTTTNEAETALNMLRENRdkFDLVISDVHMPRIDGFKLLELVGL-EMDLPVIMLSGNGETKAVMKGITHGAC 111
                   799********************.***************999889*******************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +eel++
    PKA65494.1 112 DYLLKPVRIEELRN 125
                   ************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    
MGRDEESGDQ FPIGMRVLAV DDDLTCLKVL ESLLLRCQYH VTTTNEAETA LNMLRENRDK  60
FDLVISDVHM PRIDGFKLLE LVGLEMDLPV IMLSGNGETK AVMKGITHGA CDYLLKPVRI  120
EELRNIWQHV VRRKRFDQKN RKNIDNDVDD HEKTQRASIE GMQGGGTSGT SDCSGKVNRK  180
RKEQNDEDDD DGEENDNECE DPSTQKKPRV VWSAELHRKF VAAVNQLGID KAVPKRILDL  240
MNVEKLTREN VASHLQKYRL YLKRLSAVAS QQANMAAALG GRDPSFLHMR SFDGYGNFLG  300
LNPFQTSGVS SIPNSNLLGL PGFSPGMVQI SRNQNNSSNS MNDLSKFQQI AFPSNQHGSL  360
LQGIPTSLEF DQMQQKQKLR NESNNHLPGV YSGAPSNSFI STTNSSLFMQ DHQQQPQQNR  420
GSGSHSLDNL PDLSRLNETW QTVSSLSGYI DNTASSNVGG NVTSTIMQMN NSTMDIPTDN  480
GLLTGRDSLI GRQTLMPSFG IDDDPRYLNF RNSGSLKQKL EDPKQHSALE PLTPFNSSLN  540
SSMPNQTVQT LLNTVADRQR LHNMTNQATI NSTSLTRHKT DKSVINSHIV YNEGNTSVAP  600
KMQGGFGSNA CNLDELMNAM TKTERDEIGF ADGEMGSDFF SLSTCM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-111ARR-B family protein