PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA65503.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family C2H2
Protein Properties Length: 263aa    MW: 27496.9 Da    PI: 7.7622
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA65503.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002189111123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C + F ++  L  H++ H
  PKA65503.1  89 FPCNYCQRKFYSSQALGGHQNAH 111
                 89*****************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    
MTQLHTMEAE SRGAAAAGEQ SLSDASSISI SGDGSKSKFM LEDEEKTSSP EQAVELDLIS  60
SLVSGANQPA LPAAASPDSA EGVAEQRVFP CNYCQRKFYS SQALGGHQNA HKRERSLAKR  120
GRGGPPAAAV AAMGFHGGRS SSLGIQAHAM VHKPYLGAPG TAVAAIAGMM MGRQGWCRPP  180
STAFLGHRPT VGRLPAEEYA AGMLMAARGP AVRFEEVPAP AATVAGGGVS YHYRWLSSGD  240
GVVINHLNSH HEETHKLDLS LKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.11e-20C2H2 family protein