PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA65659.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 422aa MW: 46470.7 Da PI: 9.5163

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA65659.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18	7.7e-06	79	101	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C +C++ F r nL+ H r+H PKA65659.1 79 YVCDICNQGFQRDQNLQMHRRRH 101 9*********************9 PP
2	zf-C2H2	12.2	0.00054	164	185	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C+ C+k + +s++k H++t+ PKA65659.1 164 ACSRCSKAYAVHSDFKAHLKTC 185 6*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MFRIFPPQPP ESPAAAAAGN HASQKKRKRR PAGTPGTSFS SFIRESKEIK FPTQTSRSTD 60 PDAEVVSLSP RTLLESDRYV CDICNQGFQR DQNLQMHRRR HKVPWKLLKR ESPSPEAAAV 120 PAKKRVFVCP EQSCLHHDPC HALGDLVGIK KHFRRKHSAH RQWACSRCSK AYAVHSDFKA 180 HLKTCGTRGH SCDCGRVFSR VESFIEHQDS CNAGRGRPEL CTPQQRSSLP HMASSPSPPR 240 DTIAGAPPPP SPASQAPPLP LFVRQQPQQN IELQLLPPPS PHTDSGIGAD AEEDAELHLS 300 IGRRPSSPVE LRSAMMKKAT ADAARVEARR HVELAEREMA AARSIRKQAQ AELEKASALR 360 AAASRQINAI LRQITCLQCQ QLLHPEATQT QTAPFCSSPD MAGFLSSAGN DDGERSIIQP 420 EV

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MFRIFPPQPP ESPAAAAAGN HASQKKRKRR PAGTPGTSFS SFIRESKEIK FPTQTSRSTD  60
PDAEVVSLSP RTLLESDRYV CDICNQGFQR DQNLQMHRRR HKVPWKLLKR ESPSPEAAAV  120
PAKKRVFVCP EQSCLHHDPC HALGDLVGIK KHFRRKHSAH RQWACSRCSK AYAVHSDFKA  180
HLKTCGTRGH SCDCGRVFSR VESFIEHQDS CNAGRGRPEL CTPQQRSSLP HMASSPSPPR  240
DTIAGAPPPP SPASQAPPLP LFVRQQPQQN IELQLLPPPS PHTDSGIGAD AEEDAELHLS  300
IGRRPSSPVE LRSAMMKKAT ADAARVEARR HVELAEREMA AARSIRKQAQ AELEKASALR  360
AAASRQINAI LRQITCLQCQ QLLHPEATQT QTAPFCSSPD MAGFLSSAGN DDGERSIIQP  420
EV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	30	QKKRKRR
2	25	30	KKRKRR
3	26	31	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-113	C2H2 family protein