PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA65669.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 279aa MW: 31525.2 Da PI: 4.6976

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA65669.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.7	2.7e-18	18	65	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed ll ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl PKA65669.1 18 RGPWTSDEDFLLTNYIAIHGEGRWNSLARCAGLNRTGKSCRLRWLNYL 65 89********************************************97 PP
2	Myb_DNA-binding	44.4	3.8e-14	71	114	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+ E++l++ + ++G++ W++Ia++++ gRt++++k++w++ PKA65669.1 71 RGNITPAEQLLIIVLQSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 114 7999****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence
MDMGELRIHS EEEIEPRRGP WTSDEDFLLT NYIAIHGEGR WNSLARCAGL NRTGKSCRLR 60 WLNYLRPDVR RGNITPAEQL LIIVLQSRWG NRWSKIAQYL PGRTDNEIKN YWRTRVQKHA 120 KQLRCDVNSK QFKDALRYLW LPRLIERIAA DNSAAEAADC GDLAGGDQTF SGGNNVDVIP 180 LLEESGRESS SSSSVGSTSL GCSTDVTTGS PANAVSGGCE IMQDFWPPET GCEWWREPVM 240 PSPGEYDYDG GLMPEPEQLW GGEMNDSLWS VERIWQLQQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06490.1	1e-77	MYB family protein