PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA65783.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

HD-ZIP

Protein Properties

Length: 202aa MW: 23948.9 Da PI: 5.8564

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA65783.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.7	2.3e-19	78	132	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+ +++++ e++++LA+kl+L rqV vWFqNrRa+ k PKA65783.1 78 RKKLRLTKEQSSLLEESFQAHKTLDPERKKDLAEKLSLRPRQVEVWFQNRRARTK 132 788899***********************************************98 PP
2	HD-ZIP_I/II	121.6	4.1e-39	78	165	1	88
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rl+keq++lLEesF+++++L+perK++la++L l+prqv+vWFqnrRARtk+kq+E+d+e L+r++++l+een+rL++eveeLr PKA65783.1 78 RKKLRLTKEQSSLLEESFQAHKTLDPERKKDLAEKLSLRPRQVEVWFQNRRARTKLKQTEVDCEILRRWCERLSEENRRLRREVEELR 165 69*************************************************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence
MELGLGIGCG GFSGDRGGRR EPRPPVKLHL WFPSCPKPEE QEEEEEEEEE EEENTQLKDS 60 DDSEKRNDIE SHMIGRTRKK LRLTKEQSSL LEESFQAHKT LDPERKKDLA EKLSLRPRQV 120 EVWFQNRRAR TKLKQTEVDC EILRRWCERL SEENRRLRRE VEELRIHSEA EAIRVCPACQ 180 RAEGEEDEKI KKKKPRVFQV CN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	82	RTRKKLR
2	77	83	TRKKLRL
3	127	135	RRARTKLKQ
4	155	194	RRLRREVEELRIHSEAEAIRVCPACQRAEGEEDEKIKKKK
5	189	196	KIKKKKPR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22800.1	2e-31	HD-ZIP family protein